IL_7TOR_168

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

7TOR|1|A28S|A|1960

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_168 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.3251

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

7TOR|1|A28S|U|1957
7TOR|1|A28S|A|1958
7TOR|1|A28S|U|1959
7TOR|1|A28S|A|1960
7TOR|1|A28S|G|1961
7TOR|1|A28S|A|1962
7TOR|1|A28S|C|1963
7TOR|1|A28S|A|1964
7TOR|1|A28S|G|1965
*
7TOR|1|A28S|C|2022
7TOR|1|A28S|C|2023
7TOR|1|A28S|G|2024
7TOR|1|A28S|A|2025
7TOR|1|A28S|A|2026

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL20

eL20

Chain ALP0

60S acidic ribosomal protein P0