IL_7TOR_199
3D structure
- PDB id
- 7TOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGAAUG*CGCG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOR_199 not in the Motif Atlas
- Homologous match to IL_9PN5_084
- Geometric discrepancy: 0.4169
- The information below is about IL_9PN5_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_89862.3
- Basepair signature
- cWW-L-tHS-L-R-L-cWW-L
- Number of instances in this motif group
- 8
Unit IDs
7TOR|1|A28S|C|3708
7TOR|1|A28S|U|3709
7TOR|1|A28S|G|3710
7TOR|1|A28S|A|3711
7TOR|1|A28S|A|3712
7TOR|1|A28S|U|3713
7TOR|1|A28S|G|3714
*
7TOR|1|A28S|C|3739
7TOR|1|A28S|G|3740
7TOR|1|A28S|C|3741
7TOR|1|A28S|G|3742
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain A18S
- Small subunit ribosomal RNA; SSU rRNA
- Chain AL02
- 60S ribosomal protein L8
- Chain ETRN
- Transfer RNA; tRNA
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