IL_7TOR_233

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUCAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_233 not in the Motif Atlas

Homologous match to IL_8C3A_125

Geometric discrepancy: 0.1371

The information below is about IL_8C3A_125

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7TOR|1|A28S|C|4596
7TOR|1|A28S|U|4597
7TOR|1|A28S|C|4598
7TOR|1|A28S|A|4599
7TOR|1|A28S|G|4600
7TOR|1|A28S|U|4601
7TOR|1|A28S|A|4602
7TOR|1|A28S|C|4603
*
7TOR|1|A28S|G|4608
7TOR|1|A28S|G|4609
7TOR|1|A28S|A|4610
7TOR|1|A28S|A|4611
7TOR|1|A28S|C|4612
7TOR|1|A28S|C|4613
7TOR|1|A28S|G|4614

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL09

60S ribosomal protein L9

Chain AL23

60S ribosomal protein L23

Chain AL40

eL40