IL_7TOR_235

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

7TOR|1|A28S|U|4634, 7TOR|1|A28S|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOR_235 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.2997

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7TOR|1|A28S|U|4632
7TOR|1|A28S|G|4633
7TOR|1|A28S|U|4634
7TOR|1|A28S|A|4635
7TOR|1|A28S|U|4636
7TOR|1|A28S|G|4637
*
7TOR|1|A28S|C|4662
7TOR|1|A28S|G|4663
7TOR|1|A28S|A|4664
7TOR|1|A28S|A|4665
7TOR|1|A28S|G|4666

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL24

Ribosomal protein L24

Chain AL31

60S ribosomal protein L31