3D structure

PDB id
7TOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UCCC*GUCA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOR_243 not in the Motif Atlas
Geometric match to IL_5EW4_002
Geometric discrepancy: 0.2463
The information below is about IL_5EW4_002
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

7TOR|1|A28S|U|4885
7TOR|1|A28S|C|4886
7TOR|1|A28S|C|4887
7TOR|1|A28S|C|4888
*
7TOR|1|A28S|G|4931
7TOR|1|A28S|U|4932
7TOR|1|A28S|C|4933
7TOR|1|A28S|A|4934

Current chains

Chain A28S
28S rRNA

Nearby chains

Chain AL06
60S ribosomal protein L6
Chain AL14
60S ribosomal protein L14

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0954 s