3D structure

PDB id
7TOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GACAGGAUUG*CUCGAUUC
Length
18 nucleotides
Bulged bases
7TOR|1|A18S|G|1285
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7TOR_291 not in the Motif Atlas
Homologous match to IL_8P9A_470
Geometric discrepancy: 0.2866
The information below is about IL_8P9A_470
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28304.1
Basepair signature
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
Number of instances in this motif group
1

Unit IDs

7TOR|1|A18S|G|1281
7TOR|1|A18S|A|1282
7TOR|1|A18S|C|1283
7TOR|1|A18S|A|1284
7TOR|1|A18S|G|1285
7TOR|1|A18S|G|1286
7TOR|1|A18S|A|1287
7TOR|1|A18S|U|1288
7TOR|1|A18S|U|1289
7TOR|1|A18S|G|1290
*
7TOR|1|A18S|C|1309
7TOR|1|A18S|U|1310
7TOR|1|A18S|C|1311
7TOR|1|A18S|G|1312
7TOR|1|A18S|A|1313
7TOR|1|A18S|U|1314
7TOR|1|A18S|U|1315
7TOR|1|A18S|C|1316

Current chains

Chain A18S
18S rRNA

Nearby chains

Chain AS10
40S ribosomal protein S10
Chain AS12
40S ribosomal protein S12
Chain AS29
40S ribosomal protein S29
Chain AS31
40S ribosomal protein S27a

Coloring options:


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