IL_7TOS_024
3D structure
- PDB id
- 7TOS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGGCUAAC*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOS_024 not in the Motif Atlas
- Homologous match to IL_4LFB_020
- Geometric discrepancy: 0.1224
- The information below is about IL_4LFB_020
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
7TOS|1|16S|C|504
7TOS|1|16S|G|505
7TOS|1|16S|G|506
7TOS|1|16S|C|507
7TOS|1|16S|U|508
7TOS|1|16S|A|509
7TOS|1|16S|A|510
7TOS|1|16S|C|511
*
7TOS|1|16S|G|540
7TOS|1|16S|G|541
Current chains
- Chain 16S
- 16S ribosomal RNA
Nearby chains
- Chain S04
- 30S ribosomal protein S4
- Chain S12
- 30S ribosomal protein S12
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