IL_7TOS_046

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGCAU*AUGG

Length

10 nucleotides

Bulged bases

7TOS|1|16S|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_046 not in the Motif Atlas

Geometric match to IL_4V88_473

Geometric discrepancy: 0.3009

The information below is about IL_4V88_473

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

7TOS|1|16S|C|1051
7TOS|1|16S|U|1052
7TOS|1|16S|G|1053
7TOS|1|16S|C|1054
7TOS|1|16S|A|1055
7TOS|1|16S|U|1056
*
7TOS|1|16S|A|1204
7TOS|1|16S|U|1205
7TOS|1|16S|G|1206
7TOS|1|16S|G|1207

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S03

30S ribosomal protein S3

Chain S10

30S ribosomal protein S10

Chain S14

30S ribosomal protein S14