IL_7TOS_047

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

7TOS|1|16S|C|1200, 7TOS|1|16S|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_047 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.1037

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_24264.1

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

7TOS|1|16S|G|1057
7TOS|1|16S|G|1058
*
7TOS|1|16S|U|1199
7TOS|1|16S|C|1200
7TOS|1|16S|A|1201
7TOS|1|16S|U|1202
7TOS|1|16S|C|1203

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S03

30S ribosomal protein S3

Chain S10

30S ribosomal protein S10

Chain S14

30S ribosomal protein S14