IL_7TOS_050

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

7TOS|1|16S|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_050 not in the Motif Atlas

Homologous match to IL_5J7L_051

Geometric discrepancy: 0.1554

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

7TOS|1|16S|G|1124
7TOS|1|16S|U|1125
7TOS|1|16S|U|1126
7TOS|1|16S|G|1127
7TOS|1|16S|C|1128
*
7TOS|1|16S|G|1144
7TOS|1|16S|A|1145
7TOS|1|16S|A|1146
7TOS|1|16S|C|1147
7TOS|1|16S|U|1148
7TOS|1|16S|C|1149

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S09

30S ribosomal protein S9

Chain S10

30S ribosomal protein S10