IL_7TOS_058

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_058 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1252

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7TOS|1|16S|G|1401
7TOS|1|16S|C|1402
7TOS|1|16S|C|1403
7TOS|1|16S|C|1404
*
7TOS|1|16S|G|1497
7TOS|1|16S|U|1498
7TOS|1|16S|A|1499
7TOS|1|16S|A|1500
7TOS|1|16S|C|1501

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain 23S

Large subunit ribosomal RNA; LSU rRNA