IL_7TOS_072

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_072 not in the Motif Atlas

Geometric match to IL_5J7L_251

Geometric discrepancy: 0.1133

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7TOS|1|23S|C|239
7TOS|1|23S|C|240
7TOS|1|23S|A|241
7TOS|1|23S|G|242
7TOS|1|23S|U|243
7TOS|1|23S|A|244
7TOS|1|23S|G|245
*
7TOS|1|23S|C|253
7TOS|1|23S|G|254
7TOS|1|23S|A|255
7TOS|1|23S|A|256
7TOS|1|23S|C|257
7TOS|1|23S|G|258

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L15

50S ribosomal protein L15

Chain L35

50S ribosomal protein L35