IL_7TOS_103

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_103 not in the Motif Atlas

Geometric match to IL_5J7L_283

Geometric discrepancy: 0.1956

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7TOS|1|23S|G|1038
7TOS|1|23S|A|1039
7TOS|1|23S|A|1040
7TOS|1|23S|G|1041
*
7TOS|1|23S|C|1114
7TOS|1|23S|G|1115
7TOS|1|23S|G|1116
7TOS|1|23S|C|1117

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L06

50S ribosomal protein L6

Chain L16

50S ribosomal protein L16

Chain L25

50S ribosomal protein L25

Chain L36

50S ribosomal protein L36