IL_7TOS_109

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7TOS|1|23S|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_109 not in the Motif Atlas

Geometric match to IL_5J7L_288

Geometric discrepancy: 0.1023

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

7TOS|1|23S|C|1208
7TOS|1|23S|U|1209
7TOS|1|23S|G|1210
7TOS|1|23S|C|1211
7TOS|1|23S|G|1212
7TOS|1|23S|A|1213
7TOS|1|23S|A|1214
7TOS|1|23S|G|1215
*
7TOS|1|23S|U|1234
7TOS|1|23S|G|1235
7TOS|1|23S|G|1236
7TOS|1|23S|A|1237
7TOS|1|23S|G|1238

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L20

50S ribosomal protein L20