IL_7TOS_112

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

7TOS|1|23S|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_112 not in the Motif Atlas

Geometric match to IL_4WF9_050

Geometric discrepancy: 0.2188

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

7TOS|1|23S|C|1319
7TOS|1|23S|C|1320
7TOS|1|23S|A|1321
7TOS|1|23S|A|1322
7TOS|1|23S|C|1323
*
7TOS|1|23S|G|1331
7TOS|1|23S|G|1332
7TOS|1|23S|G|1333

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L22

50S ribosomal protein L22

Chain L23

50S ribosomal protein L23