IL_7TOS_117

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

7TOS|1|23S|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_117 not in the Motif Atlas

Geometric match to IL_5J7L_296

Geometric discrepancy: 0.1795

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7TOS|1|23S|G|1432
7TOS|1|23S|A|1433
7TOS|1|23S|A|1434
7TOS|1|23S|G|1435
*
7TOS|1|23S|C|1557
7TOS|1|23S|C|1558
7TOS|1|23S|U|1559
7TOS|1|23S|G|1560
7TOS|1|23S|C|1561

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L02

50S ribosomal protein L2