IL_7TOS_131

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_131 not in the Motif Atlas

Geometric match to IL_5J7L_310

Geometric discrepancy: 0.1187

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

7TOS|1|23S|U|1720
7TOS|1|23S|G|1721
7TOS|1|23S|A|1722
7TOS|1|23S|G|1723
7TOS|1|23S|G|1724
*
7TOS|1|23S|U|1736
7TOS|1|23S|G|1737
7TOS|1|23S|G|1738
7TOS|1|23S|A|1739
7TOS|1|23S|G|1740

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains