IL_7TOS_144

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

7TOS|1|23S|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_144 not in the Motif Atlas

Geometric match to IL_7RQB_081

Geometric discrepancy: 0.0905

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

7TOS|1|23S|A|2070
7TOS|1|23S|A|2071
*
7TOS|1|23S|U|2438
7TOS|1|23S|A|2439
7TOS|1|23S|C|2440
7TOS|1|23S|U|2441

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L02

50S ribosomal protein L2

Chain PR

PR20, ALS/FTD dipeptide repeat protein