IL_7TOS_178
3D structure
- PDB id
- 7TOS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7TOS_178 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.0791
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
7TOS|1|5S|C|71
7TOS|1|5S|G|72
7TOS|1|5S|A|73
7TOS|1|5S|U|74
7TOS|1|5S|G|75
7TOS|1|5S|G|76
7TOS|1|5S|U|77
7TOS|1|5S|A|78
7TOS|1|5S|G|79
*
7TOS|1|5S|C|97
7TOS|1|5S|G|98
7TOS|1|5S|A|99
7TOS|1|5S|G|100
7TOS|1|5S|A|101
7TOS|1|5S|G|102
7TOS|1|5S|U|103
7TOS|1|5S|A|104
7TOS|1|5S|G|105
Current chains
- Chain 5S
- 5S ribosomal RNA
Nearby chains
- Chain 23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain L16
- 50S ribosomal protein L16
- Chain L25
- 50S ribosomal protein L25
- Chain L30
- 50S ribosomal protein L30
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