IL_7TOS_187

3D structure

PDB id

7TOS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosomes bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TOS_187 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1389

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7TOS|1|23S|U|1851
7TOS|1|23S|U|1852
7TOS|1|23S|A|1853
7TOS|1|23S|A|1854
7TOS|1|23S|U|1855
7TOS|1|23S|U|1856
7TOS|1|23S|G|1857
7TOS|1|23S|A|1858
7TOS|1|23S|U|1859
7TOS|1|23S|G|1860
*
7TOS|1|23S|U|1882
7TOS|1|23S|U|1883
7TOS|1|23S|G|1884
7TOS|1|23S|A|1885
7TOS|1|23S|U|1886
7TOS|1|23S|C|1887
7TOS|1|23S|G|1888
7TOS|1|23S|A|1889
7TOS|1|23S|A|1890
7TOS|1|23S|G|1891

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L1

50S ribosomal protein L1