IL_7TQL_048

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

7TQL|1|2|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TQL_048 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.1049

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7TQL|1|2|C|931
7TQL|1|2|G|932
7TQL|1|2|G|933
7TQL|1|2|G|934
7TQL|1|2|G|935
*
7TQL|1|2|C|1007
7TQL|1|2|A|1008
7TQL|1|2|A|1009
7TQL|1|2|G|1010

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

ribosomal protein uS2

Chain N

ribosomal protein uS15

Chain c

40S ribosomal protein S26