IL_7TQL_049

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TQL_049 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.0878

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7TQL|1|2|G|942
7TQL|1|2|U|943
7TQL|1|2|A|944
7TQL|1|2|U|945
*
7TQL|1|2|A|981
7TQL|1|2|G|982
7TQL|1|2|A|983
7TQL|1|2|C|984

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

ribosomal protein uS2

Chain P

ribosomal protein uS11