IL_7TQL_052

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TQL_052 not in the Motif Atlas

Homologous match to IL_4V88_436

Geometric discrepancy: 0.0944

The information below is about IL_4V88_436

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7TQL|1|2|C|1047
7TQL|1|2|G|1048
7TQL|1|2|A|1049
7TQL|1|2|A|1050
7TQL|1|2|G|1051
*
7TQL|1|2|C|1067
7TQL|1|2|G|1068
7TQL|1|2|U|1069
7TQL|1|2|A|1070
7TQL|1|2|G|1071

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

ribosomal protein uS11

Chain c

40S ribosomal protein S26