IL_7TTU_007

3D structure

PDB id

7TTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGAACUG*CUUAGUACC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TTU_007 not in the Motif Atlas

Geometric match to IL_4WF9_008

Geometric discrepancy: 0.1038

The information below is about IL_4WF9_008

Detailed Annotation

9x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84694.2

Basepair signature

cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7TTU|1|1|G|190
7TTU|1|1|A|191
7TTU|1|1|G|192
7TTU|1|1|A|193
7TTU|1|1|A|194
7TTU|1|1|C|195
7TTU|1|1|U|196
7TTU|1|1|G|197
*
7TTU|1|1|C|204
7TTU|1|1|U|205
7TTU|1|1|U|206
7TTU|1|1|A|207
7TTU|1|1|G|208
7TTU|1|1|U|209
7TTU|1|1|A|210
7TTU|1|1|C|211
7TTU|1|1|C|212

Current chains

Chain 1

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L28

Chain P

50S ribosomal protein L34

Chain X

50S ribosomal protein L15