IL_7TUT_035

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

7TUT|1|K|G|748, 7TUT|1|K|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TUT_035 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1873

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7TUT|1|K|G|745
7TUT|1|K|A|746
7TUT|1|K|A|747
7TUT|1|K|G|748
7TUT|1|K|G|749
7TUT|1|K|U|750
7TUT|1|K|G|751
7TUT|1|K|G|752
*
7TUT|1|K|U|911
7TUT|1|K|G|912
7TUT|1|K|U|913
7TUT|1|K|U|914
7TUT|1|K|A|915
7TUT|1|K|C|916
7TUT|1|K|A|917
7TUT|1|K|G|918
7TUT|1|K|C|919

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L14

Chain S

eL20