IL_7TUT_080

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TUT_080 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0847

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7TUT|1|K|G|2358
7TUT|1|K|U|2359
7TUT|1|K|A|2360
7TUT|1|K|G|2361
7TUT|1|K|U|2362
7TUT|1|K|A|2363
7TUT|1|K|G|2364
*
7TUT|1|K|C|3858
7TUT|1|K|G|3859
7TUT|1|K|A|3860
7TUT|1|K|A|3861
7TUT|1|K|A|3862
7TUT|1|K|C|3863

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain P

uL22