IL_7TUT_101

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

7TUT|1|K|A|3663, 7TUT|1|K|U|3679, 7TUT|1|K|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TUT_101 not in the Motif Atlas

Homologous match to IL_8C3A_088

Geometric discrepancy: 0.0848

The information below is about IL_8C3A_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

7TUT|1|K|C|3660
7TUT|1|K|G|3661
7TUT|1|K|A|3662
7TUT|1|K|A|3663
7TUT|1|K|G|3664
7TUT|1|K|G|3665
*
7TUT|1|K|U|3677
7TUT|1|K|G|3678
7TUT|1|K|U|3679
7TUT|1|K|U|3680
7TUT|1|K|G|3681
7TUT|1|K|A|3682
7TUT|1|K|C|3683
7TUT|1|K|G|3684

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain p

eL43