IL_7TUT_138

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

7TUT|1|K|U|4634, 7TUT|1|K|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7TUT_138 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.2897

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7TUT|1|K|U|4632
7TUT|1|K|G|4633
7TUT|1|K|U|4634
7TUT|1|K|A|4635
7TUT|1|K|U|4636
7TUT|1|K|G|4637
*
7TUT|1|K|C|4662
7TUT|1|K|G|4663
7TUT|1|K|A|4664
7TUT|1|K|A|4665
7TUT|1|K|G|4666

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain W

60S ribosomal protein L24

Chain d

eL31

Chain w

uL3