IL_7U2I_333

3D structure

PDB id

7U2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, aminoacylated P-site fMet-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7U2I_333 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.0991

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7U2I|1|2a|C|1303
7U2I|1|2a|G|1304
7U2I|1|2a|G|1305
7U2I|1|2a|A|1306
7U2I|1|2a|U|1307
7U2I|1|2a|U|1308
*
7U2I|1|2a|A|1329
7U2I|1|2a|U|1330
7U2I|1|2a|G|1331
7U2I|1|2a|A|1332
7U2I|1|2a|A|1333
7U2I|1|2a|G|1334

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2m

30S ribosomal protein S13

Chain 2u

30S ribosomal protein Thx