IL_7UCJ_129
3D structure
- PDB id
- 7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S translation initiation complex with mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- U(B8H)GA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: B8H
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UCJ_129 not in the Motif Atlas
- Homologous match to IL_8P9A_327
- Geometric discrepancy: 0.2583
- The information below is about IL_8P9A_327
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
7UCJ|1|5|U|4295
7UCJ|1|5|B8H|4296
7UCJ|1|5|G|4297
7UCJ|1|5|A|4298
*
7UCJ|1|5|U|4312
7UCJ|1|5|A|4313
7UCJ|1|5|C|4314
7UCJ|1|5|A|4315
Current chains
- Chain 5
- 28s rRNA
Nearby chains
- Chain D
- Ribosomal_L18_c domain-containing protein
- Chain Q
- 60S ribosomal protein L18
- Chain T
- 60S ribosomal protein L21
- Chain b
- 60S ribosomal protein L29
- Chain o
- 60S ribosomal protein L36a
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