3D structure

PDB id
7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S translation initiation complex with mRNA and Harringtonine
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
C(UR3)CAGUAC*GGAACCG
Length
15 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UCJ_144 not in the Motif Atlas
Homologous match to IL_8C3A_125
Geometric discrepancy: 0.0827
The information below is about IL_8C3A_125
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.8
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

7UCJ|1|5|C|4596
7UCJ|1|5|UR3|4597
7UCJ|1|5|C|4598
7UCJ|1|5|A|4599
7UCJ|1|5|G|4600
7UCJ|1|5|U|4601
7UCJ|1|5|A|4602
7UCJ|1|5|C|4603
*
7UCJ|1|5|G|4608
7UCJ|1|5|G|4609
7UCJ|1|5|A|4610
7UCJ|1|5|A|4611
7UCJ|1|5|C|4612
7UCJ|1|5|C|4613
7UCJ|1|5|G|4614

Current chains

Chain 5
28s rRNA

Nearby chains

Chain B
60S ribosomal protein L3
Chain H
60S ribosomal protein L9
Chain V
60S ribosomal protein L23
Chain m
60S ribosomal protein L40

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