IL_7UCJ_189

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

7UCJ|1|9|U|305, 7UCJ|1|9|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_189 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3757

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

7UCJ|1|9|C|216
7UCJ|1|9|A|217
7UCJ|1|9|U|218
7UCJ|1|9|U|219
*
7UCJ|1|9|A|302
7UCJ|1|9|C|303
7UCJ|1|9|C|304
7UCJ|1|9|U|305
7UCJ|1|9|C|306
7UCJ|1|9|G|307
7UCJ|1|9|G|308
7UCJ|1|9|G|309

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain II

40S ribosomal protein S8