IL_7UCJ_206

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

7UCJ|1|9|A|628

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_206 not in the Motif Atlas

Homologous match to IL_8C3A_425

Geometric discrepancy: 0.3115

The information below is about IL_8C3A_425

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.2

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7UCJ|1|9|G|611
7UCJ|1|9|PSU|612
7UCJ|1|9|G|613
7UCJ|1|9|C|614
7UCJ|1|9|C|615
7UCJ|1|9|A|616
7UCJ|1|9|G|617
*
7UCJ|1|9|C|624
7UCJ|1|9|G|625
7UCJ|1|9|G|626
7UCJ|1|9|U|627
7UCJ|1|9|A|628
7UCJ|1|9|A|629
7UCJ|1|9|U|630
7UCJ|1|9|U|631
7UCJ|1|9|C|632

Current chains

Chain 9

18S rRNA

Nearby chains

Chain DD

40S ribosomal protein S3

Chain Ee

40S ribosomal protein S30

Chain XX

40S ribosomal protein S23