IL_7UCJ_208

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_208 not in the Motif Atlas

Geometric match to IL_4V88_416

Geometric discrepancy: 0.1238

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

7UCJ|1|9|G|665
7UCJ|1|9|U|666
7UCJ|1|9|U|667
7UCJ|1|9|A2M|668
7UCJ|1|9|A|669
7UCJ|1|9|A|670
7UCJ|1|9|A|671
*
7UCJ|1|9|U|1161
7UCJ|1|9|C|1162

Current chains

Chain 9

18S rRNA

Nearby chains

Chain Aa

eS26

Chain XX

40S ribosomal protein S23