IL_7UCJ_279

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_279 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0853

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7UCJ|1|5|G|2358
7UCJ|1|5|U|2359
7UCJ|1|5|A|2360
7UCJ|1|5|G|2361
7UCJ|1|5|U|2362
7UCJ|1|5|A2M|2363
7UCJ|1|5|OMG|2364
*
7UCJ|1|5|C|3858
7UCJ|1|5|G|3859
7UCJ|1|5|A|3860
7UCJ|1|5|A|3861
7UCJ|1|5|A|3862
7UCJ|1|5|C|3863

Current chains

Chain 5

28s rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain P

60S ribosomal protein L17