IL_7UCJ_290

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUA(PSU)(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

7UCJ|1|5|U|4634, 7UCJ|1|5|PSU|4636

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_290 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.4561

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7UCJ|1|5|U|4632
7UCJ|1|5|G|4633
7UCJ|1|5|U|4634
7UCJ|1|5|A|4635
7UCJ|1|5|PSU|4636
7UCJ|1|5|OMG|4637
*
7UCJ|1|5|C|4662
7UCJ|1|5|G|4663
7UCJ|1|5|A|4664
7UCJ|1|5|A|4665
7UCJ|1|5|G|4666

Current chains

Chain 5

28s rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain W

Ribosomal protein L24

Chain d

60S ribosomal protein L31