IL_7UCJ_300
3D structure
- PDB id
- 7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S translation initiation complex with mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 7UCJ|1|9|C|1331, 7UCJ|1|9|U|1494, 7UCJ|1|9|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UCJ_300 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1035
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7UCJ|1|9|U|1329
7UCJ|1|9|G|1330
7UCJ|1|9|C|1331
7UCJ|1|9|A|1332
7UCJ|1|9|U|1333
7UCJ|1|9|G|1334
7UCJ|1|9|G|1335
*
7UCJ|1|9|U|1492
7UCJ|1|9|C|1493
7UCJ|1|9|U|1494
7UCJ|1|9|G|1495
7UCJ|1|9|U|1496
7UCJ|1|9|G|1497
7UCJ|1|9|A|1498
7UCJ|1|9|U|1499
7UCJ|1|9|G|1500
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain DD
- 40S ribosomal protein S3
- Chain Dd
- 40S ribosomal protein S29
- Chain KK
- 40S ribosomal protein S10
- Chain UU
- 40S ribosomal protein S20
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