IL_7UCK_063
3D structure
- PDB id
- 7UCK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CCGGUAA*UAAAU(E7G)G
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: E7G
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UCK_063 not in the Motif Atlas
- Geometric match to IL_5TBW_038
- Geometric discrepancy: 0.1607
- The information below is about IL_5TBW_038
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
7UCK|1|5|C|1731
7UCK|1|5|C|1732
7UCK|1|5|G|1733
7UCK|1|5|G|1734
7UCK|1|5|U|1735
7UCK|1|5|A|1736
7UCK|1|5|A|1737
*
7UCK|1|5|U|1792
7UCK|1|5|A|1793
7UCK|1|5|A|1794
7UCK|1|5|A|1795
7UCK|1|5|U|1796
7UCK|1|5|E7G|1797
7UCK|1|5|G|1798
Current chains
- Chain 5
- 28s rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- Ribosomal_L18_c domain-containing protein
- Chain F
- 60S ribosomal protein L7
- Chain I
- Ribosomal protein L10
- Chain T
- 60S ribosomal protein L21
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