IL_7UG7_013

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

7UG7|1|16|U|244, 7UG7|1|16|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UG7_013 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.1088

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

7UG7|1|16|G|242
7UG7|1|16|A|243
7UG7|1|16|U|244
7UG7|1|16|U|245
7UG7|1|16|A|246
7UG7|1|16|G|247
*
7UG7|1|16|C|277
7UG7|1|16|G|278
7UG7|1|16|A|279
7UG7|1|16|C|280
7UG7|1|16|G|281
7UG7|1|16|A|282
7UG7|1|16|U|283
7UG7|1|16|C|284

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SL

30S ribosomal protein S12

Chain SQ

30S ribosomal protein S17