3D structure

PDB id
7UG7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B
Experimental method
ELECTRON MICROSCOPY
Resolution
2.58 Å

Loop

Sequence
UGUAG*CGUAGAGA
Length
13 nucleotides
Bulged bases
7UG7|1|16|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UG7_034 not in the Motif Atlas
Homologous match to IL_5J7L_035
Geometric discrepancy: 0.1224
The information below is about IL_5J7L_035
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_01488.3
Basepair signature
cWW-tSS-tSH-L-R-tHS-L-cWW
Number of instances in this motif group
10

Unit IDs

7UG7|1|16|U|684
7UG7|1|16|G|685
7UG7|1|16|U|686
7UG7|1|16|A|687
7UG7|1|16|G|688
*
7UG7|1|16|C|699
7UG7|1|16|G|700
7UG7|1|16|U|701
7UG7|1|16|A|702
7UG7|1|16|G|703
7UG7|1|16|A|704
7UG7|1|16|G|705
7UG7|1|16|A|706

Current chains

Chain 16
16S rRNA

Nearby chains

Chain 23
Large subunit ribosomal RNA; LSU rRNA
Chain SK
30S ribosomal protein S11

Coloring options:


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