IL_7UG7_094

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

7UG7|1|23|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UG7_094 not in the Motif Atlas

Geometric match to IL_5J7L_276

Geometric discrepancy: 0.088

The information below is about IL_5J7L_276

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

7UG7|1|23|C|994
7UG7|1|23|C|995
7UG7|1|23|A|996
*
7UG7|1|23|U|1159
7UG7|1|23|G|1160

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LM

50S ribosomal protein L13

Chain LT

50S ribosomal protein L20

Chain LU

Ribosomal protein L21

Chain Ld

50S ribosomal protein L30