IL_7UG7_132

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7UG7|1|23|A|1801, 7UG7|1|23|C|1816, 7UG7|1|23|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UG7_132 not in the Motif Atlas

Geometric match to IL_5J7L_313

Geometric discrepancy: 0.06

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7UG7|1|23|U|1798
7UG7|1|23|G|1799
7UG7|1|23|C|1800
7UG7|1|23|A|1801
7UG7|1|23|A|1802
7UG7|1|23|A|1803
7UG7|1|23|C|1804
*
7UG7|1|23|G|1813
7UG7|1|23|G|1814
7UG7|1|23|A|1815
7UG7|1|23|C|1816
7UG7|1|23|G|1817
7UG7|1|23|U|1818
7UG7|1|23|A|1819
7UG7|1|23|U|1820
7UG7|1|23|A|1821

Current chains

Chain 23

23S rRNA

Nearby chains

Chain 16

Small subunit ribosomal RNA; SSU rRNA

Chain LB

50S ribosomal protein L2