IL_7UG7_168

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

7UG7|1|23|U|2689, 7UG7|1|23|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UG7_168 not in the Motif Atlas

Geometric match to IL_5J7L_348

Geometric discrepancy: 0.0593

The information below is about IL_5J7L_348

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

7UG7|1|23|U|2687
7UG7|1|23|G|2688
7UG7|1|23|U|2689
7UG7|1|23|U|2690
7UG7|1|23|C|2691
*
7UG7|1|23|G|2718
7UG7|1|23|G|2719
7UG7|1|23|U|2720
7UG7|1|23|A|2721
7UG7|1|23|G|2722

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LC

50S ribosomal protein L3

Chain LQ

50S ribosomal protein L17

Chain LS

50S ribosomal protein L19