IL_7UNR_171

3D structure

PDB id

7UNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUG*CUAAUC

Length

10 nucleotides

Bulged bases

7UNR|1|a|U|1251, 7UNR|1|a|A|1274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNR_171 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.2724

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

7UNR|1|a|G|1249
7UNR|1|a|U|1250
7UNR|1|a|U|1251
7UNR|1|a|G|1252
*
7UNR|1|a|C|1271
7UNR|1|a|U|1272
7UNR|1|a|A|1273
7UNR|1|a|A|1274
7UNR|1|a|U|1275
7UNR|1|a|C|1276

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14