IL_7UNU_046

3D structure

PDB id

7UNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7UNU|1|A|U|1198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNU_046 not in the Motif Atlas

Geometric match to IL_5J7L_288

Geometric discrepancy: 0.0785

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

7UNU|1|A|C|1195
7UNU|1|A|U|1196
7UNU|1|A|G|1197
7UNU|1|A|U|1198
7UNU|1|A|G|1199
7UNU|1|A|A|1200
7UNU|1|A|A|1201
7UNU|1|A|G|1202
*
7UNU|1|A|U|1221
7UNU|1|A|G|1222
7UNU|1|A|G|1223
7UNU|1|A|A|1224
7UNU|1|A|G|1225

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L20