IL_7UNV_018

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7UNV|1|A|G|791, 7UNV|1|A|G|795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNV_018 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0833

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7UNV|1|A|G|664
7UNV|1|A|A|665
7UNV|1|A|A|666
7UNV|1|A|A|667
7UNV|1|A|C|668
*
7UNV|1|A|G|789
7UNV|1|A|A|790
7UNV|1|A|G|791
7UNV|1|A|A|792
7UNV|1|A|U|793
7UNV|1|A|A|794
7UNV|1|A|G|795
7UNV|1|A|C|796

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain N

50S ribosomal protein L15