IL_7UNV_044

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

7UNV|1|A|G|1235

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNV_044 not in the Motif Atlas

Geometric match to IL_4WF9_044

Geometric discrepancy: 0.0905

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

7UNV|1|A|C|1183
7UNV|1|A|G|1184
7UNV|1|A|U|1185
*
7UNV|1|A|A|1234
7UNV|1|A|G|1235
7UNV|1|A|U|1236
7UNV|1|A|G|1237

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain N

50S ribosomal protein L15

Chain S

50S ribosomal protein L20