IL_7UNV_046

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7UNV|1|A|U|1198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNV_046 not in the Motif Atlas

Geometric match to IL_5J7L_288

Geometric discrepancy: 0.0779

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

7UNV|1|A|C|1195
7UNV|1|A|U|1196
7UNV|1|A|G|1197
7UNV|1|A|U|1198
7UNV|1|A|G|1199
7UNV|1|A|A|1200
7UNV|1|A|A|1201
7UNV|1|A|G|1202
*
7UNV|1|A|U|1221
7UNV|1|A|G|1222
7UNV|1|A|G|1223
7UNV|1|A|A|1224
7UNV|1|A|G|1225

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L20