IL_7UNV_049

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCAAC*GAC

Length

8 nucleotides

Bulged bases

7UNV|1|A|A|1319

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNV_049 not in the Motif Atlas

Geometric match to IL_7RQB_051

Geometric discrepancy: 0.1115

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

7UNV|1|A|G|1306
7UNV|1|A|C|1307
7UNV|1|A|A|1308
7UNV|1|A|A|1309
7UNV|1|A|C|1310
*
7UNV|1|A|G|1318
7UNV|1|A|A|1319
7UNV|1|A|C|1320

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L22