IL_7UNV_169

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGGAUC*GUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNV_169 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1791

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7UNV|1|a|C|1297
7UNV|1|a|G|1298
7UNV|1|a|G|1299
7UNV|1|a|A|1300
7UNV|1|a|U|1301
7UNV|1|a|C|1302
*
7UNV|1|a|G|1323
7UNV|1|a|U|1324
7UNV|1|a|G|1325
7UNV|1|a|A|1326
7UNV|1|a|A|1327
7UNV|1|a|G|1328

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13